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Gene entry

KCNT1

potassium sodium-activated channel subfamily T member 1

Chromosome
9
Cytoband
9q34.3
Variants (rsID)
65

KCNT1 is a protein-coding gene, meaning the body reads it as instructions to build a protein, located on chromosome 9 (region 9q34.3). Its official name is “potassium sodium-activated channel subfamily T member 1”. The reference table lists 65 variants (rsID) for this gene.

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Clinically classified variants

27 reference-table entries with clinical significance.

  • rs149804567Benignsingle nucleotide variantSeizure|Developmental and epileptic encephalopathy, 14|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs149960236Benignsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Seizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs151272083Benignsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Seizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs201051863Benignsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Seizure|Autosomal dominant nocturnal frontal lobe epilepsy 5|Developmental and epileptic encephalopathy, 14
  • rs61744696Benignsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Seizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs74533482Benignsingle nucleotide variantSeizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Autosomal dominant nocturnal frontal lobe epilepsy 5|Developmental and epileptic encephalopathy, 14
  • rs142424896Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs142756900Conflicting interpretationssingle nucleotide variantSeizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs143678590Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs144766991Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs146152956Conflicting interpretationssingle nucleotide variantSeizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs147306623Conflicting interpretationssingle nucleotide variantSeizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs369562243Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs370046449Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs371135108Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs372998864Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs539139475Conflicting interpretationssingle nucleotide variantSeizure|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs545094921Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs558966732Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs769406687Conflicting interpretationssingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs200137341Likely benignsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs559344618Likely benignsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Seizure|Autosomal dominant nocturnal frontal lobe epilepsy 5|Developmental and epileptic encephalopathy, 14
  • rs370521183Pathogenicsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14
  • rs397515403Pathogenicsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs397515407Pathogenicsingle nucleotide variantAutosomal dominant nocturnal frontal lobe epilepsy 5|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Developmental and epileptic encephalopathy, 14|Epilepsy syndrome
  • rs587777264Pathogenicsingle nucleotide variantDevelopmental and epileptic encephalopathy, 14|Developmental and epileptic encephalopathy, 14|Autosomal dominant nocturnal frontal lobe epilepsy 5|Autosomal dominant nocturnal frontal lobe epilepsy 5
  • rs886041691Pathogenicsingle nucleotide variantMalignant migrating partial seizures of infancy|Developmental and epileptic encephalopathy, 14

Other listed variants

Public references

Data from the institutional reference table and public NCBI annotation. For education only; not a substitute for medical or genetic counselling.